Basic Information
VIS ID
TVIS30013305
Fusion event
HIV-LINC02118 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
51329206/52033372 (Hg38)
End
51329206/52033372 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
LINC02118
Nearest miRNA
hsa-mir-10397/Upstream/13475811; hsa-mir-103a-1/Downstream/1918132;
Nearest TSS
ENST00000502646/Upstream/23557; ENST00000506949/Downstream/754524;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/633854, chr5-CpG: 34/Downstream/754740
Nearby gene
ISL1(No orient, 638643)
Upstream sequence
taaatatgtttaaagaaataagggataaaatgttcagaaaattaaaggaatatatggtcttagggaggaacagggaatatcagcaaagatattgtgtaaa
Downstream sequence
acgactcaaaaggaaatttcagaactgaaaattataagacagaaatgaaaaaacaaatcactgaaagtgcttaacaggagattgaagaaagcagatggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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