Basic Information
VIS ID
TVIS30013307
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
65532240/66236412 (Hg38)
End
65532240/66236412 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/6532709; hsa-mir-103a-1/Downstream/5933055;
Nearest TSS
ENST00000502646/Upstream/26965; ENST00000510964/Downstream/62056;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/91476, chr5-CpG: 151/Downstream/359637
Nearby gene
SREK1(No orient, 52796)
Upstream sequence
atgatgaagcttctatcaaaatctctaaagtgtaaggttcagaaagtttccagtttggtgaacacatccatatgctggggaggtggcacaccccaagtcc
Downstream sequence
acagggacagaagctcctgtgctggggacccttccagaccttgtcctacgtacttcttcatctgtatcctgtaccacatcctatataataaactggtaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate