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TVIS30013308
Basic Information
VIS ID
TVIS30013308
Fusion event
HIV-PIK3R1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
67514930/68219102 (Hg38)
End
67514930/68219102 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIK3R1
miRNAs that regulate target gene
hsa-mir-29a-3p
;
hsa-mir-376a-3p
;
hsa-mir-29b-3p
;
hsa-mir-21-5p
;
hsa-let-7a-5p
;
hsa-mir-155-5p
;
hsa-mir-503-5p
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-424-5p
;
hsa-mir-497-5p
;
hsa-mir-646
;
hsa-mir-6838-5p
;
hsa-mir-448
;
hsa-mir-103a-3p
;
hsa-mir-107
;
hsa-mir-190a-3p
;
hsa-mir-4524a-5p
;
hsa-mir-5011-5p
;
hsa-mir-4524b-5p
;
hsa-mir-221-3p
;
hsa-mir-1277-5p
;
hsa-mir-6783-3p
;
hsa-mir-1343-3p
;
hsa-mir-6742-3p
;
hsa-mir-6852-5p
;
hsa-mir-939-3p
;
hsa-mir-4793-5p
;
hsa-mir-3924
;
hsa-mir-4789-5p
;
hsa-mir-466
;
hsa-mir-455-5p
;
hsa-mir-5580-3p
;
hsa-mir-4643
;
hsa-mir-4789-3p
;
hsa-mir-3941
;
hsa-mir-603
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
;
hsa-mir-6721-5p
;
hsa-mir-6860
;
hsa-mir-612
;
hsa-mir-5189-5p
;
hsa-mir-3187-5p
;
hsa-mir-1285-3p
;
hsa-mir-542-3p
;
hsa-mir-218-1-3p
;
hsa-mir-143-3p
;
hsa-mir-128-3p
;
hsa-mir-487a-3p
;
hsa-mir-486-5p
;
hsa-mir-1202
;
hsa-mir-126-3p
;
hsa-mir-23a-3p
;
hsa-mir-23b-3p
;
hsa-mir-302a-5p
;
hsa-mir-3658
;
hsa-mir-3972
;
hsa-mir-4317
;
hsa-mir-4755-3p
;
hsa-mir-5006-5p
;
hsa-mir-5007-5p
;
hsa-mir-7856-5p
;
hsa-mir-924
Nearest miRNA
hsa-mir-10397/Upstream/8515399; hsa-mir-103a-1/Downstream/3950365;
Nearest TSS
ENST00000502646/Upstream/1636;
ENST00000517412/Downstream/7335;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/2544
,
chr5-CpG: 26/Downstream/69283
Nearest cancer related gene
PIK3R1
(OG, No orient, 0)
Upstream sequence
TCTGCCAATACTTGTATGGAGTTACTTGCTTAAAAGAGTGGCAATTAACGACCATTTCATGTACATTAAGCCACATGAGCTGAAAAAATAGACTATATAG
Downstream sequence
TTACTTATAAACTTGTCTGTATGGCCTTTATTTATCCCCTAGGTGTTAGGTGTTTATTTATTTGAAAGGCTAGAGTGATTGTAGTATAGTGTTATTGGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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