VISDB Viral Integration Site DataBase

VIS ID

TVIS30013309

Fusion event

HIV-GTF2H2C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q13.2

Reference genome

Start

End

68876248/69580421 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-342-3p ; hsa-mir-99a-5p ; hsa-mir-619-5p ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3159 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5095 ; hsa-mir-4279 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-5697 ; hsa-mir-508-5p ; hsa-mir-562 ; hsa-mir-4438

Nearest miRNA

hsa-mir-10397/Upstream/9876718; hsa-mir-103a-1/Downstream/2589046;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/20087, chr5-CpG: 61/Downstream/444776

Upstream sequence

aggcagagctggcaatgagccgagatcacaccactgcactctagcctgggcgacagagcgagactctgtctcaaaaaagaaaacaaaagaaaaaCACtta

Downstream sequence

tattaaaaattttttaaaataaGCTACAAAggccgggcgtggtggctcatgcctgtaatcctagcactttgggaggccgaggctagcggatcacctgagg