Basic Information
VIS ID
TVIS30013316
Fusion event
HIV-ATG10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
81547015/82251196 (Hg38)
End
81547015/82251196 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATG10
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-6794-3p ; hsa-mir-342-3p ; hsa-mir-4639-3p ; hsa-mir-216b-3p ; hsa-mir-3680-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-653-5p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-382-5p ; hsa-mir-7850-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-3941 ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4789-3p
Nearest miRNA
hsa-mir-10397/Upstream/9372533; hsa-mir-103a-1/Downstream/588959;
Nearest TSS
ENST00000502646/Upstream/86751; ENST00000643922/Downstream/26755;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/278648, chr5-CpG: 49/Downstream/26818
Upstream sequence
TGCAATAACCTATCACTAGTGGATAACTCATCCCTCACCACCACCACCCCAAATCTCCATACCCAGTGTCACCAATACAAGAGGAATTGTCCCTTCCAGT
Downstream sequence
TCTTGTGAGTGGATATGTGCATAAGCATACAGACATGAATGTTTGGAGCTGAGGGGTAGAGGCAGCAAGGACAGCCACATAATTCATCCCATCAACAGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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