Basic Information
VIS ID
TVIS30013318
Fusion event
HIV-KIAA0825 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
93950393/94614688 (Hg38)
End
93950393/94614688 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5B
Target gene
KIAA0825
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10397/Upstream/993900; hsa-mir-103a-1/Downstream/1464450;
Nearest TSS
ENST00000502646/Upstream/137504; ENST00000508383/Downstream/3659;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/502957, chr5-CpG: 77/Downstream/3520
Upstream sequence
gcatcttccagtagaacacttgtccctcttgttcccctgccaaaatcctttccatcctatatggcacaaactcaatattaccttttttatgaggtctttc
Downstream sequence
ctcatctgccctcctggaaaaaaaaaaatctcttttctttgcattcccatgttttgtgttcaatgatgtatgtaaattgccctacatataattatttgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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