Basic Information
VIS ID
TVIS30013321
Fusion event
HIV-LINC02234 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
97255312/97919608 (Hg38)
End
97255312/97919608 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5B
Target gene
LINC02234
Nearest miRNA
hsa-mir-10397/Upstream/1840396; hsa-mir-103a-1/Downstream/2896874;
Nearest TSS
ENST00000502646/Upstream/38180; ENST00000505265/Downstream/241585;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/735667, chr5-CpG: 135/Downstream/849266
Nearby gene
LINC01340(No orient, 248557)
Upstream sequence
CCCCAGATTAACTTGCACTGAAGGCCTTTTGAGTGAAGATCAGTCTGGAAAGATTTTTCAGGAAAGATGGTTTAGCTAACCAGATAGAGGAATCTGACTC
Downstream sequence
CAGATCTAGTGGGCAGCCCCTCTTATTCACAGGCATTAGCCACAGCAATTACATGTTTTCCTCATTGATATGACAGAGGTGAGCCAAGACATAGAGGAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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