Basic Information
VIS ID
TVIS30013326
Fusion event
HIV-LOC105379109 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
104030104/104694403 (Hg38)
End
104030104/104694403 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
LOC105379109
Nearest miRNA
hsa-mir-10397/Upstream/3877838; hsa-mir-103a-1/Downstream/5819426;
Nearest TSS
ENST00000502646/Upstream/614492; ENST00000523745/Downstream/45138;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1434554, chr5-CpG: 253/Downstream/2975026
Nearby gene
RAB9BP1(No orient, 405071)
Upstream sequence
TAATTTCTGGAAATATGCTTTTGGCTATGCACAATGCTAGGTACAGGCCCATGAGCTTAATAAAACTTTAATATGTAAATAAGAATAACGTGTACTTTAA
Downstream sequence
GTTACTTATATACTATtgtattagtccattctcacattgctataaagaactacctgagactgggtaaatttataaacaaaagaggtttaactgactcact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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