Basic Information
VIS ID
TVIS30013328
Fusion event
HIV-CAMK4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
110610404/111274706 (Hg38)
End
110610404/111274706 (Hg38)
Orient
+
Location type
Intronic
Target gene
CAMK4
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-185-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6509-3p ; hsa-mir-196a-3p ; hsa-mir-3128 ; hsa-mir-4746-5p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-6807-5p ; hsa-mir-922 ; hsa-mir-1245b-3p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6867-5p ; hsa-mir-622 ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-3156-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-3605-5p ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4301 ; hsa-mir-329-5p ; hsa-mir-5197-3p
Nearest miRNA
hsa-mir-10397/Upstream/760791; hsa-mir-103a-1/Downstream/4981037;
Nearest TSS
ENST00000502646/Upstream/4617; ENST00000505763/Downstream/27861;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/49958, chr5-CpG: 51/Downstream/237416
Upstream sequence
aatttttggatcaatgtgtatgcacatttaaaattttaataggacagaaaaaaatagcccttcaaagaggttataccaatttattcccttcaacagggga
Downstream sequence
gtacccatttccttacatccttgctaacaTTACATGTGAAATAACTTTTTTAATGTGAGTCTGTGGGaaaatctgaagtttgttataaaagaaaaaggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate