Basic Information
VIS ID
TVIS30013333
Fusion event
HIV-MARCH3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
126320734/126985042 (Hg38)
End
126320734/126985042 (Hg38)
Orient
+
Location type
Intronic
Target gene
MARCH3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-4455 ; hsa-mir-574-5p ; hsa-mir-190a-3p ; hsa-mir-889-3p ; hsa-mir-6867-5p ; hsa-mir-5011-5p ; hsa-mir-511-3p ; hsa-mir-1277-5p ; hsa-mir-4776-3p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-3119 ; hsa-mir-129-5p ; hsa-mir-4438 ; hsa-mir-510-3p ; hsa-mir-203a-3p
Nearest miRNA
hsa-mir-10397/Upstream/7830326; hsa-mir-103a-1/Downstream/2112646;
Nearest TSS
ENST00000502646/Upstream/66814; ENST00000515002/Downstream/45127;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/206505, chr5-CpG: 174/Downstream/44889
Upstream sequence
GTGGGAGCTGGGAGGCTGGGTGGGAGGCCTCAGAGGCAGCCCTGGAAAAAAGAGGAATAACGAAAAATTGAGAAGTCAAAGGTGGGTGTGAGTGGTGAGG
Downstream sequence
AAACTCTCCCTACTCTCCCCCAGGTGGTGGTGGGAGAAATTTAATTCAGAACAATGGTGAATGGACCTGGAGGATGGGGATTTCCTTTGGGGGGACTACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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