Basic Information
VIS ID
TVIS30013340
Fusion event
HIV-LOC105379185 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
133416251/134080560 (Hg38)
End
133416251/134080560 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
LOC105379185
Nearest miRNA
hsa-mir-10397/Upstream/652854; hsa-mir-103a-1/Downstream/145197;
Nearest TSS
ENST00000502646/Upstream/75413; ENST00000521970/Downstream/34151;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/9102, chr5-CpG: 189/Downstream/33069
Nearby gene
TCF7(No orient, 34151)
Upstream sequence
CAGTGAAACAAAAACTGCAAGCCTCCACGGAGGTACAGTACCACGGGCAGGTTAAGTCACGGAGGTACAGTACCACGGGCAGGTTAAGTCACCGAGGTAC
Downstream sequence
CATACCGTGAGCAGGTTAAGTCGCGGAGGTACAGTATCATGGGCAGGTTAAGTGTTGGGGCACCaacaacatgagttgacatttattgtgctcttaccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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