VISDB Viral Integration Site DataBase

VIS ID

TVIS30013341

Fusion event

HIV-PPP2CA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

133539726/134204035 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-340-3p ; hsa-mir-197-3p ; hsa-mir-153-5p ; hsa-mir-4777-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-4766-3p ; hsa-mir-3152-3p ; hsa-mir-4305 ; hsa-mir-889-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-545-3p ; hsa-mir-96-3p ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-3646 ; hsa-mir-548c-3p ; hsa-mir-8081 ; hsa-mir-6869-5p ; hsa-mir-185-3p ; hsa-mir-4283 ; hsa-mir-4656 ; hsa-mir-4489 ; hsa-mir-5186 ; hsa-mir-3675-5p ; hsa-mir-9500 ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-5584-5p ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-630 ; hsa-mir-4670-3p ; hsa-mir-7705 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-6079 ; hsa-mir-584-5p ; hsa-mir-92a-1-5p ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-33a-3p ; hsa-mir-670-5p ; hsa-mir-4732-3p ; hsa-mir-345-3p ; hsa-mir-3133 ; hsa-mir-553 ; hsa-mir-188-5p ; hsa-mir-4319 ; hsa-mir-6866-3p ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-186-3p ; hsa-mir-216a-5p ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-548as-3p ; hsa-mir-548u ; hsa-mir-7161-5p ; hsa-mir-8087

Nearest miRNA

hsa-mir-10397/Upstream/776329; hsa-mir-103a-1/Downstream/21722;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/26606, chr5-CpG: 140/Downstream/21414

Nearest cancer related gene

PPP2CA(TSG, No orient, 0)

Upstream sequence

TCTTAAAGGTAGCACATTCATTCCTCTGAGCACTGGGATTCATCCTGGGTTTTTAGCACAGGTTAGCTCTTTTCATAGTATTTGGAGTCACCGCAGAAAC

Downstream sequence

CTTCCaccatctagtccaactccttcattttacagatgcagaaaataaCGATCTCCAAAAATATTTCGTAGGACTTTACACAATTCAGATATTAATCAAG