VISDB Viral Integration Site DataBase

VIS ID

TVIS30013342

Fusion event

HIV-SAR1B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

133963133/134627443 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-423-5p ; hsa-mir-196a-5p ; hsa-mir-3529-3p ; hsa-mir-7844-5p ; hsa-mir-1277-5p ; hsa-mir-34b-3p ; hsa-mir-154-5p ; hsa-mir-382-5p ; hsa-mir-7150 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-3665 ; hsa-mir-125a-3p ; hsa-mir-4773 ; hsa-mir-4803 ; hsa-mir-4671-3p ; hsa-mir-4473 ; hsa-mir-656-3p ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-3180-5p ; hsa-mir-302c-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3143 ; hsa-mir-27b-5p ; hsa-mir-1272 ; hsa-mir-556-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-4282 ; hsa-mir-548n ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-607 ; hsa-mir-2053 ; hsa-mir-3977 ; hsa-mir-6516-3p ; hsa-mir-3671 ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-520c-3p ; hsa-mir-302e ; hsa-mir-302a-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302b-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520f-3p ; hsa-mir-4684-5p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-4637 ; hsa-mir-6732-3p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-6500-3p ; hsa-mir-3614-5p

Nearest miRNA

hsa-mir-10397/Upstream/401591; hsa-mir-103a-1/Downstream/1175542;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/99705, chr5-CpG: 42/Downstream/5081

Upstream sequence

ccccgccACtttttatttttttgacagagtctccctctcacccagggagcgccgtctctgctcactgcaacctcaatctcggggactcaagcaatcctcc

Downstream sequence

cacctcaacctcctgagtacctgggggctacaggcataggccactatgcctggctcatttactttttAAAACCggccgggcgtggtggctcacgcctgta