VISDB Viral Integration Site DataBase

VIS ID

TVIS30013343

Fusion event

HIV-SEC24A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

134000463/134664773 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-30a-5p ; hsa-mir-320a ; hsa-mir-125b-5p ; hsa-mir-92a-3p ; hsa-mir-377-5p ; hsa-mir-329-5p ; hsa-mir-655-5p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-4464 ; hsa-mir-4524a-5p ; hsa-mir-4748 ; hsa-mir-5087 ; hsa-mir-4524b-5p ; hsa-mir-6086 ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-374a-5p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-98-3p ; hsa-mir-383-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-218-5p ; hsa-mir-4666a-3p ; hsa-mir-758-3p ; hsa-mir-892c-5p ; hsa-mir-646 ; hsa-mir-424-5p ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-9-3p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-676-5p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-888-3p ; hsa-mir-6507-5p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-5096 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-6794-3p ; hsa-mir-197-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-10397/Upstream/438921; hsa-mir-103a-1/Downstream/1138212;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/15469, chr5-CpG: 48/Downstream/73620

Upstream sequence

GACCACTTCTTTGATAAGGGAGTTACATGGCAATAATCTTTGTCTTCACTTTTGTCAACAAGGCACTGATAGTCTTGTTAGCAGTTGTAAGATTCAGTAA

Downstream sequence

TAGGCAAtttttctttttcttttttttttttttttttttttttgagacggagccttactctgtcgcccaggctagagtgcagtggcgcaatctcggctca