Basic Information
VIS ID
TVIS30013355
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
147567165/148187602 (Hg38)
End
147567165/148187602 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/4507631; hsa-mir-103a-1/Downstream/874711;
Nearest TSS
ENST00000502646/Upstream/17869; ENST00000514389/Downstream/15192;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/677437, chr5-CpG: 33/Downstream/196118
Nearby gene
SPINK14(No orient, 11983)
Upstream sequence
tccatactgtactcttctctgttactgtggaagaggtctccatgtccctaccaaagactaacccTGAACATTTTCTTTTATTGaaagaaggaagatctga
Downstream sequence
aatcgataatctcaagttacattgtgagaaactggaaaaaatgaggaaatcttaacaagataagcataaaaaagaaatcataaatcacaaagggggaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate