VISDB Viral Integration Site DataBase

VIS ID

TVIS30013356

Fusion event

HIV-GM2A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q33.1

Reference genome

Start

End

150642118/151262557 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-889-3p ; hsa-mir-4635 ; hsa-mir-1277-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-500a-3p ; hsa-mir-1294 ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-6087 ; hsa-mir-5186 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-4695-5p ; hsa-mir-25-3p ; hsa-mir-578 ; hsa-mir-205-5p ; hsa-mir-1224-3p ; hsa-mir-1306-5p ; hsa-mir-1825 ; hsa-mir-199a-5p ; hsa-mir-199b-5p ; hsa-mir-3925-3p ; hsa-mir-483-3p ; hsa-mir-508-5p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-766-3p

Nearest miRNA

hsa-mir-10397/Upstream/1529667; hsa-mir-103a-1/Downstream/259530;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/9455, chr5-CpG: 35/Downstream/184984

Upstream sequence

ctggcacccaggacatgctcagtacattttATATCTTGTGAACATTTCGATTAGTATCTGTCTTATCCTGCAGTCTCTTGACCCAGACACAAGTCCTGGA

Downstream sequence

TATGTGGCAGCTTTCAGCTCCCCTGCACCTCCTACCAAGCCTTTTCCTAGCAGAGTCATTGTGTTTCCATTACTGTTCCTCAAGTGATAGGGGGTCAAGC