Basic Information
VIS ID
TVIS30013361
Fusion event
HIV-LINC01366 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
169761997/170334993 (Hg38)
End
169761997/170334993 (Hg38)
Orient
+
Location type
ncRNA_exonic
Fragile sites / regions
FRA5G
Target gene
LINC01366
Nearest miRNA
hsa-mir-10397/Upstream/306427; hsa-mir-10523/Downstream/1051663;
Nearest TSS
ENST00000502646/Upstream/3562; ENST00000518387/Downstream/18494;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/101768, chr5-CpG: 64/Downstream/168872
Upstream sequence
TGGAAAGTTTCAGAGGGGAGGCAGaaaggagaggtctatagctcctccagattctaggtattaatttactaagatattccTAAGCCAGAAAACagagaca
Downstream sequence
gaagacaaagagaaagagggaagaagagcaagacagagagttagagagagacaaagagagagagttagagacaaagagagagtggagaggagagagagCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate