Basic Information
VIS ID
TVIS30013370
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
3209707/3209473 (Hg38)
End
3209707/3209473 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4645/Upstream/355366; hsa-mir-10398/Downstream/1938760;
Nearest TSS
ENST00000381078/Upstream/13717; ENST00000416079/Downstream/18262;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/46184, chr6-CpG: 63/Downstream/15209
Nearby gene
LINC02525(No orient, 13706)
Upstream sequence
ccaggtgatgagtaggcacttgagggttagaggagcCGGGTGTAGACTCAGAAGCTCCGCCCTGCAGATGAATCATCAGGAGAACCCGGAAGAAGTAGGA
Downstream sequence
AGAGTGGGAGACCTGAGAAATCCGTATTTTCCCAGTCTCCTCTGCTTGAGACTGCAAGTGGGGCCACACTAATAGAAACCTATGGTTTTCTCCAAAAGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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