Basic Information
VIS ID
TVIS30013371
Fusion event
HIV-FARS2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
5372472/5372239 (Hg38)
End
5372472/5372239 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6B
Target gene
FARS2
Nearest miRNA
hsa-mir-3691/Upstream/223917; hsa-mir-10398/Downstream/797065;
Nearest TSS
ENST00000381078/Upstream/110713; ENST00000445533/Downstream/32303;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/110537, chr6-CpG: 29/Downstream/479138
Upstream sequence
agtacataaagcaaaactgaagaattaaaagttaagtttgacaaatttataaccatgttagaagattttaagtgaccttggtcagaaaccaatgggttac
Downstream sequence
gaagttaaaatgtgtaaagatacagacagtctgaaaaggtggttgacaagtttgatttaTATTTATTTTTAAAATTTGGTAGCcataaacatatatatac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate