Basic Information
VIS ID
TVIS30013377
Fusion event
HIV-TDP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
24656729/24656501 (Hg38)
End
24656729/24656501 (Hg38)
Orient
-
Location type
Intronic
Target gene
TDP2
Nearest miRNA
hsa-mir-3691/Upstream/6084621; hsa-mir-10398/Downstream/2491125;
Nearest TSS
ENST00000381078/Upstream/10346; ENST00000476436/Downstream/2671;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/10138, chr6-CpG: 76/Downstream/9809
Upstream sequence
agggagaaaaggaaagagaaataacaaagataatgaaaggagaggcgaggggaatggtgggagggagggagagggaaaaggattttccaactaaggtttt
Downstream sequence
ccacatattaaaattccacagaataaaagttcccaccaagcattcagtacaatagattttaaaaagacccaaagaacacgagggttaaaaagaagaccct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate