Basic Information
VIS ID
TVIS30013380
Fusion event
HIV-CMAHP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
25126952/25126724 (Hg38)
End
25126952/25126724 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CMAHP
Nearest miRNA
hsa-mir-3691/Upstream/6554844; hsa-mir-10398/Downstream/2020902;
Nearest TSS
ENST00000381078/Upstream/69651; ENST00000461945/Downstream/152354;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/215366, chr6-CpG: 36/Downstream/12968
Upstream sequence
TGGAATTAGTTAAAACAAAAACTATCAATAGCTAATACTTAAATATTAAAAAAAAGCCTAATCATAAATAGGTAATTTTAGAAATAAAATTAATAAATTG
Downstream sequence
AAGATAAAGCCTAATCATCAATAGGTAATTTTAGAAATAAAATTAATAAATTGAAGATAAACTCCATGTCACAAAATGACACATTTTAGAGAACAGAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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