Basic Information
VIS ID
TVIS30013385
Fusion event
HIV-GUSBP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26914218/26946439 (Hg38)
End
26914218/26946439 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA6C
Target gene
GUSBP2
Nearest miRNA
hsa-mir-3691/Upstream/8374559; hsa-mir-10398/Downstream/201187;
Nearest TSS
ENST00000381078/Upstream/260198; ENST00000607607/Downstream/10553;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/50442, chr6-CpG: 43/Downstream/73380
Upstream sequence
cTCCTATCAGAAGACAAAGAAGTCTGCATAGCACTGACAAAAATATTTCTGAGCAGTACAAATATTTATTTCATGAAACCATAAACATGTCCTGTGGAAA
Downstream sequence
TAACTTTAAGGTCCATTGTCCCTGTGGCTCACAGATTTACTTTCTGAGGTAATTTACATTTTCTCTTATTCTCCATGCCTCCATCTTAAATTAGAACAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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