Basic Information
VIS ID
TVIS30013404
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
32541033/32573256 (Hg38)
End
32541033/32573256 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/393380; hsa-mir-10398/Downstream/176656;
Nearest TSS
ENST00000381078/Upstream/42969; ENST00000422863/Downstream/16592;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/50905, chr6-CpG: 41/Downstream/10818
Nearby gene
HLA-DRB1(No orient, 5514)
Upstream sequence
aaaaatatatcaaagagataataattgcatccaggtaaaatggtcattatttactcttgacataatcaggtacttagaaaataaaaacaatagacaagct
Downstream sequence
cacagatttaataagtgaatttaaataatgttgctgattacaaagtcagtatacattaaaccaattatgttactgatatagtttggatgcttgtgccctc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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