Basic Information
VIS ID
TVIS30013407
Fusion event
HIV-TAP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
32793367/32825590 (Hg38)
End
32793367/32825590 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA6H
Target gene
TAP2
miRNAs that regulate target gene
hsa-mir-4323 ; hsa-mir-4690-3p ; hsa-mir-5685 ; hsa-mir-6840-3p
Nearest miRNA
hsa-mir-1236/Upstream/75611; hsa-mir-10398/Downstream/382245;
Nearest TSS
ENST00000381078/Upstream/8542; ENST00000412095/Downstream/5137;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/63707, chr6-CpG: 39/Downstream/12917
Upstream sequence
CGAAAATACTGAGCAAGAATAAAGATATACATATTTGCTTAATACACAGTAAACTTCTCTGGAAAGATAAACACAAAGCTGGAAGAACGGATTGCCTATG
Downstream sequence
CAAGAGGAATTAGCAAACCTTGAGAAGGATTGAGAGTGAGGCTTTCCTCTGTATACTTCTTTGTGTCTTTTGAATTTCAAACCACATTCATATATTGCtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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