Basic Information
VIS ID
TVIS30013417
Fusion event
HIV-RPS10-NUDT3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
34372311/34404534 (Hg38)
End
34372311/34404534 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
RPS10-NUDT3
Nearest miRNA
hsa-mir-1236/Upstream/163798; hsa-mir-10398/Downstream/1065974;
Nearest TSS
ENST00000381078/Upstream/11860; ENST00000487760/Downstream/20614;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/11509, chr6-CpG: 52/Downstream/21014
Upstream sequence
TGAAGATgggcacagtggctcacacctgtaatcccagcactttgggaggctgaggcaggaggattgcttgagcccaggagatcaagaccagcctgggcaa
Downstream sequence
catagtgagacttgtctctacaaacaacttaaaaattatccaagtgtggtggcgcgggcctgcagtcccaggtactcaagaggctgagaagggaggatcg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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