Basic Information
VIS ID
TVIS30013432
Fusion event
HIV-ZFAND3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
37860587/37892811 (Hg38)
End
37860587/37892811 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
ZFAND3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-98-5p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6731-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-7844-5p ; hsa-mir-3199 ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-4521 ; hsa-mir-4709-3p ; hsa-mir-488-3p ; hsa-mir-541-5p ; hsa-mir-5681a ; hsa-mir-6730-5p ; hsa-mir-6768-3p ; hsa-mir-7854-3p ; hsa-mir-8052
Nearest miRNA
hsa-mir-1236/Upstream/337389; hsa-mir-10398/Downstream/1181503;
Nearest TSS
ENST00000381078/Upstream/72869; ENST00000469208/Downstream/37148;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/73037, chr6-CpG: 77/Downstream/746618
Upstream sequence
agattgaacaagatacaaagcgagactcaattagcagaattaaaaatgaaagaggagacactactgttgaccttacagaaatacaaaggattataaaaga
Downstream sequence
atactgtgaacaaattgtacaccagcagattatataacttagaggaaatgcatcagttcttagactctgaacttctgaaacagactcagaaagtagaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate