Basic Information
VIS ID
TVIS30013435
Fusion event
HIV-NFYA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
41055027/41087288 (Hg38)
End
41055027/41087288 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
NFYA
miRNAs that regulate target gene
hsa-mir-140-3p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-221-3p ; hsa-mir-203a-3p ; hsa-mir-4668-5p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3613-3p ; hsa-mir-6835-3p ; hsa-mir-4282 ; hsa-mir-548e-5p ; hsa-mir-4713-5p ; hsa-mir-6845-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-645 ; hsa-mir-361-3p ; hsa-mir-4286 ; hsa-mir-4301 ; hsa-mir-6777-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-552-5p ; hsa-mir-1238-3p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-502-5p ; hsa-mir-4326 ; hsa-mir-629-5p
Nearest miRNA
hsa-mir-1236/Upstream/2012907; hsa-mir-10398/Downstream/511435;
Nearest TSS
ENST00000381078/Upstream/14305; ENST00000448827/Downstream/10470;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/13348, chr6-CpG: 70/Downstream/13448
Upstream sequence
AACCAGATAAATTTGTTTACTTATTTATTTGCCAATACTTTCTGAATGCCAATTATGAGCTGAGTATTTGGAAAAAATAATTCAGAAGACCTAGGCAATC
Downstream sequence
TATCCCCTAACAAAGTAGGATCCATGAATGTCTCTAAGACATGGAACCCATTGACCTGTTTTTTTCACCTTCCTTCCATCAGTAGTCCTTTTTCCTATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate