VISDB Viral Integration Site DataBase

VIS ID

TVIS30013443

Fusion event

HIV-HSP90AB1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.1

Reference genome

Start

End

44217572/44249835 (Hg38)

Orient

-

Location type

splicing

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-877-3p ; hsa-mir-455-3p ; hsa-mir-296-3p ; hsa-mir-93-3p ; hsa-mir-615-3p ; hsa-mir-501-5p ; hsa-mir-181d-5p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-6832-5p ; hsa-mir-185-3p ; hsa-mir-4489 ; hsa-mir-4283 ; hsa-mir-6716-5p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-335-5p ; hsa-mir-3675-5p ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-5003-5p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-1226-3p ; hsa-mir-1233-5p ; hsa-mir-1238-5p ; hsa-mir-1302 ; hsa-mir-1343-5p ; hsa-mir-17-3p ; hsa-mir-1909-3p ; hsa-mir-194-3p ; hsa-mir-214-3p ; hsa-mir-3117-5p ; hsa-mir-3144-5p ; hsa-mir-3191-3p ; hsa-mir-3619-5p ; hsa-mir-4298 ; hsa-mir-4300 ; hsa-mir-4530 ; hsa-mir-4641 ; hsa-mir-4648 ; hsa-mir-4652-5p ; hsa-mir-4688 ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-485-5p ; hsa-mir-505-5p ; hsa-mir-5591-5p ; hsa-mir-5698 ; hsa-mir-6090 ; hsa-mir-634 ; hsa-mir-6499-3p ; hsa-mir-6510-5p ; hsa-mir-6722-3p ; hsa-mir-6726-5p ; hsa-mir-6743-5p ; hsa-mir-6778-5p ; hsa-mir-6794-5p ; hsa-mir-6798-5p ; hsa-mir-6810-5p ; hsa-mir-6827-5p ; hsa-mir-6870-5p ; hsa-mir-6884-5p ; hsa-mir-7111-5p ; hsa-mir-761 ; hsa-mir-920 ; hsa-mir-939-5p

Nearest miRNA

hsa-mir-10398/Upstream/815215; hsa-mir-10524/Downstream/4371;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/1865, chr6-CpG: 84/Downstream/7126

Upstream sequence

TGGCAGAGAAAGTGGTTGTGATCACAAAGCACAACGATGATGAACAGTATGCTTGGGAGTCTTCTGCTGGAGGTTCCTTCACTGTGCGTGCTGACCATGG

Downstream sequence

TAAGTTAGCTTTTCTGTTACAAGGTAGTTGGGTTAGGATTTTCTGGGCTCACACCAGTAGCAGAAATTTTGGGCATCCTGTCTGTAAAGCAGTTCTTCAC