Basic Information
VIS ID
TVIS30013444
Fusion event
HIV-TCTE1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
44257996/44290259 (Hg38)
End
44257996/44290259 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
TCTE1
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6804-5p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-1284 ; hsa-mir-6865-3p ; hsa-mir-1228-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-342-3p ; hsa-mir-4709-3p ; hsa-mir-4699-5p ; hsa-mir-4474-3p
Nearest miRNA
hsa-mir-10398/Upstream/35974; hsa-mir-10524/Downstream/145382;
Nearest TSS
ENST00000381078/Upstream/3906; ENST00000515220/Downstream/7429;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/3846, chr6-CpG: 76/Downstream/6974
Upstream sequence
GCATCTCAGAGTGTAGGGCTGGAGGGGGTTGCTGCTTAGTGGTACCGGctgactttgcatttctggctttgtcagttatgtgctttgtgaccttggccaa
Downstream sequence
gttacttaacctatctgagcttcagtttccttatctgagaaactggataataatatcttcctacatgggctgtagtggagatccccctgagataatgGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate