Basic Information
VIS ID
TVIS30013448
Fusion event
HIV-LOC105377858 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
75515581/74805865 (Hg38)
End
75515581/74805865 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6D
Target gene
LOC105377858
Nearest miRNA
hsa-mir-10398/Upstream/1838112; hsa-mir-10524/Downstream/622542;
Nearest TSS
ENST00000381078/Upstream/71586; ENST00000607221/Downstream/296046;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1109454, chr6-CpG: 28/Downstream/279299
Nearby gene
LOC101928516(No orient, 115138)
Upstream sequence
AAGAAGAAAATTTATCATCTATTGAAAGAGAAGAAAATTGAAGTAGAAGGAAATAACCTTATATTAGGTCTCTCTCTTTTGTATTGGCCTTTATTATAAA
Downstream sequence
ATACTTGAGAAAAAAATCTGTGTTATTAAATGTATTTTTTACAATGATATCAAACACTACTGATTAAACAATATACTAGCTAAAAAAGAGAAATGTAGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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