Basic Information
VIS ID
TVIS30013449
Fusion event
HIV-SNX14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
86286096/85576378 (Hg38)
End
86286096/85576378 (Hg38)
Orient
+
Location type
Intronic
Target gene
SNX14
Nearest miRNA
hsa-mir-10398/Upstream/7037069; hsa-mir-1202/Downstream/4736364;
Nearest TSS
ENST00000381078/Upstream/7895; ENST00000305344/Downstream/5468;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/125701, chr6-CpG: 107/Downstream/17017
Upstream sequence
TTCTTTCTTTACACTCTATTCATGAAGTTCAAATGGGAATAAGAGCTTTTATCTCCCTAAGATTCTATCTCCCTCACTCAAGACTGGATTAAGAATAGAC
Downstream sequence
AAAACGATGACAACAACAACAAAATAggccaatcatagcatcttcttccctacctacagctgactggttcagggatggacacCATCTGAGACAACCTAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate