Basic Information
VIS ID
TVIS30013452
Fusion event
HIV-UBE2J1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
90042309/89332590 (Hg38)
End
90042309/89332590 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6G
Target gene
UBE2J1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-221-3p ; hsa-mir-93-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-6826-3p ; hsa-mir-3157-5p ; hsa-mir-5088-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-3938 ; hsa-mir-6769a-3p ; hsa-mir-204-5p ; hsa-mir-211-5p
Nearest miRNA
hsa-mir-10398/Upstream/10793281; hsa-mir-1202/Downstream/980152;
Nearest TSS
ENST00000381078/Upstream/17291; ENST00000520458/Downstream/20258;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/185771, chr6-CpG: 109/Downstream/19731
Upstream sequence
cagaattttgtgatgatagtaatgtttatgtctacactgtccaatatggtacccattagccacatgtggctatggagcacttgaaatgtggtgtgactga
Downstream sequence
ggaactgaattttaaattctacttgattttgattaaatttaaatgtagacacctgcatgtggctggtggctactgtgttggacagagcaAGTCTAAGTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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