Basic Information
VIS ID
TVIS30013458
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
104135294/103687419 (Hg38)
End
104135294/103687419 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/4562723; hsa-mir-1202/Downstream/3096706;
Nearest TSS
ENST00000381078/Upstream/1759276; ENST00000635857/Downstream/1044951;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2284321, chr6-CpG: 79/Downstream/1171825
Nearby gene
HACE1(No orient, 1040674)
Nearest cancer related gene
HACE1(TSG, No orient, 1040674)
Upstream sequence
GGGAATTTCCATGGTCTTAATATGATTTTTTGAAATATTTTATACCATTGATTATCAATAAAAGATGTAAAAAGTCACAATATAGACTATGTCACCATTT
Downstream sequence
AGATCTAAATAAACAGACGATTGCTTGGAGGAATAGTTGATACAGTGCaaaattttctaataataaaaaataatataaGACGTTTTCTTTAAGCCTGTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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