Basic Information
VIS ID
TVIS30013460
Fusion event
HIV-LOC105377921 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
105904300/105456425 (Hg38)
End
105904300/105456425 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377921
Nearest miRNA
hsa-mir-10398/Upstream/6331729; hsa-mir-1202/Downstream/1327700;
Nearest TSS
ENST00000381078/Upstream/53341; ENST00000424894/Downstream/175771;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/53043, chr6-CpG: 57/Downstream/524811
Nearby gene
PREP(No orient, 53301)
Upstream sequence
ttttatgcatccaaatcTGGGTGAGAGAGGGGAAGGTAAGGCATACCTGGAGAAAACCCTATACTGGGAGATAAAAACTTCTCTCACTGTATAACACAGA
Downstream sequence
GTACTTAAAAACATTCTAAAATGTTATTTAATGATTTTTTAAAAATCACATGTAGCAAGCTGAAACAATAGAACACAATCCCCATAACTGGTCTTCAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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