Basic Information
VIS ID
TVIS30013468
Fusion event
HIV-GOPC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
117905986/117584823 (Hg38)
End
117905986/117584823 (Hg38)
Orient
-
Location type
Intronic
Target gene
GOPC
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-103a-3p
Nearest miRNA
hsa-mir-10398/Upstream/10800603; hsa-mir-1202/Downstream/1484224;
Nearest TSS
ENST00000381078/Upstream/11252; ENST00000368494/Downstream/17541;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/36456, chr6-CpG: 55/Downstream/17370
Nearest cancer related gene
GOPC(OG, No orient, 0)
Upstream sequence
tgattcccaatgttagagatggggcctggtgagaagtgactggatggatcatggggcaaattcctcatgaatggtttagcaccatccccttggtggtaac
Downstream sequence
tgaattctcactcagttcatacgagatctggttgttggaaagtctgtgacctcccccaccttactcttgcttctttacttgcatgtgatccatctgctcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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