Basic Information
VIS ID
TVIS30013469
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
123452170/123131025 (Hg38)
End
123452170/123131025 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3115768; hsa-mir-1202/Downstream/3353606;
Nearest TSS
ENST00000381078/Upstream/134336; ENST00000615864/Downstream/258396;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/134417, chr6-CpG: 98/Downstream/672007
Nearby gene
CLVS2(No orient, 58106)
Upstream sequence
GATTTTGTCTAGAAAGTAAAACGTCTGGTTAATAAAACTGTATACCTAGTTATTATTAAAAAGTGAGCATTTATTAattaaaacctaagttttatgaagt
Downstream sequence
caggtttttgtttattttatttcttgctcctccgcaaaacctggaacagtgcccagcacagagtaggcaatgagaacatatttcttgaagaaatTTAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate