Basic Information
VIS ID
TVIS30013470
Fusion event
HIV-LOC105377992 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
127010778/126689633 (Hg38)
End
127010778/126689633 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377992
Nearest miRNA
hsa-mir-10398/Upstream/204920; hsa-mir-1202/Downstream/5102539;
Nearest TSS
ENST00000381078/Upstream/349459; ENST00000485757/Downstream/428971;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/45791, chr6-CpG: 27/Downstream/428487
Nearby gene
MIR588(No orient, 204919)
Upstream sequence
aagggcatccaaattggtaaagaggaagtcgaactgttgctattcattgattatatgattgtatgcctagaaaaccctaaagaatcattgaaaaagctcc
Downstream sequence
tagatctgatgaatgagttcagtaaagtttcaggatacaaaatcaatgtacacaaattagcagcactgttatacaccaacaatgacgaagctgagaatca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate