Basic Information
VIS ID
TVIS30013471
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
127422987/127101842 (Hg38)
End
127422987/127101842 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/617129; hsa-mir-1202/Downstream/4690330;
Nearest TSS
ENST00000381078/Upstream/761668; ENST00000485757/Downstream/16762;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/458000, chr6-CpG: 27/Downstream/16278
Nearby gene
RSPO3(No orient, 17061)
Upstream sequence
AGATCTTTTTTCTCCTTTCCCATTCTTGCAGGGAACCCACATTTTAAAAAacatacgcacatacacatacacacacacacacacacaTAATGTTTACCTA
Downstream sequence
TAGATCTATTTGTGAGCTCTGATGATCTTCCACTATCTTATGTTGATAGACCCTATTACAGTGTTTAGTACCTACCACTTCAAAATTTAAATAGTTACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate