Basic Information
VIS ID
TVIS30013473
Fusion event
HIV-THEMIS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
128216188/127895043 (Hg38)
End
128216188/127895043 (Hg38)
Orient
-
Location type
Intronic
Target gene
THEMIS
Nearest miRNA
hsa-mir-10398/Upstream/1410330; hsa-mir-1202/Downstream/3897129;
Nearest TSS
ENST00000381078/Upstream/230489; ENST00000417390/Downstream/5915;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/378482, chr6-CpG: 173/Downstream/623970
Upstream sequence
aaaagtatatacTTTTTGAAAatacatatatttatatgaatatatatatttatatgaaaaaaatgtatatataatacatatatTTAtatgaaaggatcct
Downstream sequence
ccaacatttgaaaaatctttaaagttaactcacataaacacactaaagaaagtaaatcacattattatcttaataagctcaatacctatttattcggaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate