Basic Information
VIS ID
TVIS30013476
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
130078888/129757743 (Hg38)
End
130078888/129757743 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3273030; hsa-mir-1202/Downstream/2034429;
Nearest TSS
ENST00000381078/Upstream/47518; ENST00000526087/Downstream/103528;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/827569, chr6-CpG: 208/Downstream/261298
Nearby gene
ARHGAP18(No orient, 47518)
Upstream sequence
ctctgttgcccaagctggagtgctgtggcgtgatctcagttcactgcaacctctgcctcctgggttcaagtgattctctcacctcaacctcccaagtagc
Downstream sequence
tgggattacaggcatgtcccaccacatccagctgatttttgtattttcagtagagatggggtttcaccatgttgggcaggctggtctcgaactcctgacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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