Basic Information
VIS ID
TVIS30013480
Fusion event
HIV-FILNC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
140169544/139848407 (Hg38)
End
140169544/139848407 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
FILNC1
Nearest miRNA
hsa-mir-10398/Upstream/1413113; hsa-mir-1202/Downstream/356845;
Nearest TSS
ENST00000381078/Upstream/8720; ENST00000414038/Downstream/6443;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/472966, chr6-CpG: 46/Downstream/2239929
Upstream sequence
AGGTTAAAAAACAAAtttatgtgcattctcattttctcctcccagtcatcacatgagttacatcctatcatcattcccattttatgtgtgaagtaaAGGT
Downstream sequence
TTTTCTCCATgtgatccagctaaaaaacaagatttgtattcatggggacctaggtttaattctgattttatcatttactagttgtgttctcttctcaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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