Basic Information
VIS ID
TVIS30013481
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
140485609/140164472 (Hg38)
End
140485609/140164472 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/1729178; hsa-mir-1202/Downstream/40780;
Nearest TSS
ENST00000381078/Upstream/77790; ENST00000565399/Downstream/688452;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/789031, chr6-CpG: 46/Downstream/1923864
Nearby gene
MIR3668(No orient, 40780)
Upstream sequence
AGAGATTTAAGAAAATGAAAATATTACAAAAAAACAAAGTATTCTTCAAATAGCTGACTCTTCCATGGCCCTTAGGTGAAAATAAGCACCCGTAAGTACC
Downstream sequence
ATTTTGTACCACCAATCTTCATTAGATACTGCAGAAATCTAACTGTTGAAGGTGCTGAGAAAGTATTGTTCCTGTATTACCTGCattattaaattaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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