Basic Information
VIS ID
TVIS30013484
Fusion event
HIV-UTRN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
145124487/144803351 (Hg38)
End
145124487/144803351 (Hg38)
Orient
-
Location type
Intronic
Target gene
UTRN
miRNAs that regulate target gene
hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-455-3p ; hsa-mir-505-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-let-7b-5p ; hsa-mir-3136-3p ; hsa-mir-4313 ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-1915-5p ; hsa-mir-6793-3p ; hsa-mir-4714-3p ; hsa-mir-203b-5p ; hsa-mir-3691-3p ; hsa-mir-556-3p ; hsa-mir-6718-5p ; hsa-mir-6801-5p
Nearest miRNA
hsa-mir-10398/Upstream/4119468; hsa-mir-1202/Downstream/6299324;
Nearest TSS
ENST00000381078/Upstream/3970; ENST00000465299/Downstream/33022;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/516207, chr6-CpG: 132/Downstream/931409
Upstream sequence
ACTTTGAAGATTTTTTTTTTCTTTTAAGTAAACTCATTTATGTTGAATTAATTAGTGCAGAAAAAAATATTAACTTTTTTAAATATCTGTGTTTTGATTT
Downstream sequence
TAAACTTTTTTGGTAGCAAATTCTTTTAAGAGCTGATACTGACCTACACTGAAAATGATACTATGTAACGAAAAATCATGTTTCTTTTAGACATATTTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate