Basic Information
VIS ID
TVIS30013486
Fusion event
HIV-EPM2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145821940/145500804 (Hg38)
End
145821940/145500804 (Hg38)
Orient
+
Location type
Intronic
Target gene
EPM2A
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p
Nearest miRNA
hsa-mir-10398/Upstream/4816921; hsa-mir-1202/Downstream/5601871;
Nearest TSS
ENST00000381078/Upstream/661755; ENST00000603994/Downstream/131519;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1213660, chr6-CpG: 132/Downstream/233956
Nearby gene
EPM2A(No orient, 124500)
Upstream sequence
CTCAGATTCTTACCTTCTATGAATGAGCAGAGCTAACAAATTTCTCTCTGGCCTGGGAGAAAATGACCTTCAACTATAGCTGAGTCAAGTGTAGATCTGG
Downstream sequence
AAATTGTCTTCAAAAATTACTTGCTCCCACAGTTTGTCTTGACCAGCTCTCTCCCTTCTAGCAAATGTCCTCAGGTTTGGTTTGTGGGAAATGTCAGGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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