Basic Information
VIS ID
TVIS30013500
Fusion event
HIV-SYTL3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
159089643/158668611 (Hg38)
End
159089643/158668611 (Hg38)
Orient
+
Location type
Intronic
Target gene
SYTL3
miRNAs that regulate target gene
hsa-mir-449c-3p ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-219b-3p ; hsa-mir-4768-3p ; hsa-mir-302f ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5690 ; hsa-mir-890
Nearest miRNA
hsa-mir-10398/Upstream/58821; hsa-mir-1913/Downstream/96050;
Nearest TSS
ENST00000381078/Upstream/7292; ENST00000451712/Downstream/120863;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/23849, chr6-CpG: 147/Downstream/149635
Upstream sequence
agccactgcgcccggccGGCAGAGTCTTAAAAGCCACTTAGAAGAGCTTGCCTCCAAGACAGTAGGAGCTGGAGCCTGAGCATGTGCTCTTTGCCAAGCG
Downstream sequence
AACACCATGCCGAAAGTCTGCCTGGTTTTGCAGGGCAAGATCAGGAGAGCGGAAGGTAAAGGTAAAAGAGCAATCTGAGAGTTGCTGCAGTGAATGAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate