Basic Information
VIS ID
TVIS30013501
Fusion event
HIV-LOC105378083 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
159444783/159023751 (Hg38)
End
159444783/159023751 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378083
Nearest miRNA
hsa-mir-10398/Upstream/258998; hsa-mir-1913/Downstream/7485603;
Nearest TSS
ENST00000381078/Upstream/23564; ENST00000606466/Downstream/2195;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/23490, chr6-CpG: 28/Downstream/105299
Nearby gene
TAGAP(No orient, 10718)
Upstream sequence
atgtgctcattttttttaccacttctactcaatattgaattggagcttctagccactgcaataaagaatgataaaatgataaagattggaaagaaggaag
Downstream sequence
caaaatcgtccttatttgcaggcaatacgattgtttacatatgattgttttctacatcctaaggatctaaaaaataattagaagtagtatattattccat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate