Basic Information
VIS ID
TVIS30013508
Fusion event
HIV-ELFN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
1725168/1685532 (Hg38)
End
1725168/1685532 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
ELFN1
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6867-5p ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-4800-5p ; hsa-mir-3138 ; hsa-mir-6767-3p
Nearest miRNA
hsa-mir-339/Upstream/662506; hsa-mir-10399/Downstream/158648;
Nearest TSS
ENST00000635602/Upstream/64878; ENST00000424383/Downstream/2587;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14651, chr7-CpG: 19/Downstream/28278
Nearby gene
ELFN1(No orient, 23630)
Upstream sequence
ccatcaccacatatgctagtgcacttgatgtctcatgtatgtcagaggcacagtttatttttctgttcagttttttctctgtgttctttagattgaatac
Downstream sequence
ttctattgattgatcttcaagcacactaatttttttttgccatcttgcaagccctcatgtaatgaatttttcatttccgcagtcatactttttaattcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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