Basic Information
VIS ID
TVIS30013510
Fusion event
HIV-SLC29A4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
5328067/5288436 (Hg38)
End
5328067/5288436 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
SLC29A4
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-548al ; hsa-mir-4445-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6087 ; hsa-mir-383-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321
Nearest miRNA
hsa-mir-339/Upstream/499797; hsa-mir-10399/Downstream/207383;
Nearest TSS
ENST00000635602/Upstream/5407; ENST00000439491/Downstream/10893;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4501, chr7-CpG: 42/Downstream/8394
Upstream sequence
actctgtcacccggctggagtgcactggtgcaatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcccaagtagc
Downstream sequence
tgggacggcaggtgcctgccaccgtgcccagctaattttgtgtatttttagtagagacggggtttcaccgtggtctcgatctcctgacctcatgatccgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate