Basic Information
VIS ID
TVIS30013515
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
12735870/12696245 (Hg38)
End
12735870/12696245 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/5629200; hsa-mir-10399/Downstream/5430975;
Nearest TSS
ENST00000635602/Upstream/8610; ENST00000443947/Downstream/29907;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/8622, chr7-CpG: 18/Downstream/1293508
Nearby gene
ARL4A(No orient, 5312)
Upstream sequence
tcttacaaggttatttatgaagGAAGCTTTATGAGTCATCTGGCATGATTTCTAGCAAGTAGACCAAACATTCACTCAGGTATATGAACAACTGCCTCAT
Downstream sequence
GCTGCCAGGTGTTTAGAATATAGCAATCACCAAAACAGAAGGGTAGTttgtctctttcctactctagaaagtaagctccacagggacggggcatttatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate