Basic Information
VIS ID
TVIS30013517
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
13834239/13794614 (Hg38)
End
13834239/13794614 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/6727569; hsa-mir-10399/Downstream/4332606;
Nearest TSS
ENST00000635602/Upstream/77399; ENST00000412014/Downstream/64411;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1106991, chr7-CpG: 18/Downstream/195139
Nearby gene
ETV1(No orient, 96617)
Nearest cancer related gene
ETV1(OG, No orient, 96617)
Upstream sequence
gcaatcaaggcttttaaaaatgaatttcaaagtattaccaataaagtttgtttttttcctttcaacgcaatccatttggtgaaaactgtagataagtaga
Downstream sequence
ttggccatgtaatacagcaacaacaaaaactttagctttaaaatgcatcatttgcctaaattggcattccttccagctgatgacattctgggagctttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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